IL_6HCM_237

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CAC*GUCG

Length

7 nucleotides

Bulged bases

6HCM|1|52|C|1210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_237 not in the Motif Atlas

Geometric match to IL_5MSF_001

Geometric discrepancy: 0.202

The information below is about IL_5MSF_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6HCM|1|52|C|1086
6HCM|1|52|A|1087
6HCM|1|52|C|1088
*
6HCM|1|52|G|1208
6HCM|1|52|U|1209
6HCM|1|52|C|1210
6HCM|1|52|G|1211

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain F3

uL30

Chain T3

eL21