IL_6HCM_242

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CGAAGCCAGA*UCUGGUGGAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|52|C|1551
6HCM|1|52|G|1552
6HCM|1|52|A|1553
6HCM|1|52|A|1554
6HCM|1|52|G|1555
6HCM|1|52|C|1556
6HCM|1|52|C|1557
6HCM|1|52|A|1558
6HCM|1|52|G|1559
6HCM|1|52|A|1560
*
6HCM|1|52|U|1567
6HCM|1|52|C|1568
6HCM|1|52|U|1569
6HCM|1|52|G|1570
6HCM|1|52|G|1571
6HCM|1|52|U|1572
6HCM|1|52|G|1573
6HCM|1|52|G|1574
6HCM|1|52|A|1575
6HCM|1|52|G|1576

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain A3

Ribosomal protein L8

Chain M1

Ribosomal protein S11

Chain R3

eL19

Chain p3

eL43