IL_6HCM_284

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CUAUCAA*UGACCACGG

Length

16 nucleotides

Bulged bases

6HCM|1|A1|U|361, 6HCM|1|A1|C|399, 6HCM|1|A1|C|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|A1|C|358
6HCM|1|A1|U|359
6HCM|1|A1|A|360
6HCM|1|A1|U|361
6HCM|1|A1|C|362
6HCM|1|A1|A|363
6HCM|1|A1|A|364
*
6HCM|1|A1|U|396
6HCM|1|A1|G|397
6HCM|1|A1|A|398
6HCM|1|A1|C|399
6HCM|1|A1|C|400
6HCM|1|A1|A|401
6HCM|1|A1|C|402
6HCM|1|A1|G|403
6HCM|1|A1|G|404

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain 52

Large subunit ribosomal RNA; LSU rRNA

Chain J1

eS8

Chain M1

Ribosomal protein S11

Chain Y1

uS12