IL_6HCM_286

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CGGGG*CGAUUCCG

Length

13 nucleotides

Bulged bases

6HCM|1|A1|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|A1|C|409
6HCM|1|A1|G|410
6HCM|1|A1|G|411
6HCM|1|A1|G|412
6HCM|1|A1|G|413
*
6HCM|1|A1|C|424
6HCM|1|A1|G|425
6HCM|1|A1|A|426
6HCM|1|A1|U|427
6HCM|1|A1|U|428
6HCM|1|A1|C|429
6HCM|1|A1|C|430
6HCM|1|A1|G|431

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain F1

eS4

Chain K1

Ribosomal protein S9 (Predicted)

Chain Y1

uS12