IL_6HCM_294

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

AGGGA*UUUUCAUU

Length

13 nucleotides

Bulged bases

6HCM|1|A1|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|A1|A|922
6HCM|1|A1|G|923
6HCM|1|A1|G|924
6HCM|1|A1|G|925
6HCM|1|A1|A|926
*
6HCM|1|A1|U|1015
6HCM|1|A1|U|1016
6HCM|1|A1|U|1017
6HCM|1|A1|U|1018
6HCM|1|A1|C|1019
6HCM|1|A1|A|1020
6HCM|1|A1|U|1021
6HCM|1|A1|U|1022

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain O1

uS15

Chain X1

Ribosomal protein S15a

Chain c1

40S ribosomal protein S27