3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
AUUCGUAU*AGACGGACCAGAGCGAAAGCAUUU
Length
32 nucleotides
Bulged bases
6HCM|1|A1|G|991
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6HCM|1|A1|A|938
6HCM|1|A1|U|939
6HCM|1|A1|U|940
6HCM|1|A1|C|941
6HCM|1|A1|G|942
6HCM|1|A1|U|943
6HCM|1|A1|A|944
6HCM|1|A1|U|945
*
6HCM|1|A1|A|981
6HCM|1|A1|G|982
6HCM|1|A1|A|983
6HCM|1|A1|C|984
6HCM|1|A1|G|985
6HCM|1|A1|G|986
6HCM|1|A1|A|987
6HCM|1|A1|C|988
6HCM|1|A1|C|989
6HCM|1|A1|A|990
6HCM|1|A1|G|991
6HCM|1|A1|A|992
6HCM|1|A1|G|993
6HCM|1|A1|C|994
6HCM|1|A1|G|995
6HCM|1|A1|A|996
6HCM|1|A1|A|997
6HCM|1|A1|A|998
6HCM|1|A1|G|999
6HCM|1|A1|C|1000
6HCM|1|A1|A|1001
6HCM|1|A1|U|1002
6HCM|1|A1|U|1003
6HCM|1|A1|U|1004

Current chains

Chain A1
18S ribosomal RNA

Nearby chains

Chain A3
Ribosomal protein L8
Chain C1
40S ribosomal protein S3a
Chain O1
uS15
Chain P1
uS11
Chain b1
eS26
Chain p3
eL43

Coloring options:

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