3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
GCGG*UAC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6HCM_330 not in the Motif Atlas
Homologous match to IL_8P9A_319
Geometric discrepancy: 0.2129
The information below is about IL_8P9A_319
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_55516.2
Basepair signature
cWW-cWW-cSH-cWW
Number of instances in this motif group
7

Unit IDs

6HCM|1|52|G|3895
6HCM|1|52|C|3896
6HCM|1|52|G|3897
6HCM|1|52|G|3898
*
6HCM|1|52|U|4563
6HCM|1|52|A|4564
6HCM|1|52|C|4565

Current chains

Chain 52
28S ribosomal RNA

Nearby chains

Chain B3
uL3
Chain O3
uL13

Coloring options:


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