IL_6HCM_332
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 6HCM|1|52|G|4084, 6HCM|1|52|G|4086, 6HCM|1|52|G|4087, 6HCM|1|52|C|4162, 6HCM|1|52|U|4163
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCM_332 not in the Motif Atlas
- Homologous match to IL_8CRE_106
- Geometric discrepancy: 0.3338
- The information below is about IL_8CRE_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_00555.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
6HCM|1|52|G|4082
6HCM|1|52|U|4083
6HCM|1|52|G|4084
6HCM|1|52|A|4085
6HCM|1|52|G|4086
6HCM|1|52|G|4087
6HCM|1|52|C|4088
*
6HCM|1|52|G|4161
6HCM|1|52|C|4162
6HCM|1|52|U|4163
6HCM|1|52|C|4164
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain 82
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A3
- Ribosomal protein L8
- Chain G3
- eL8
- Chain X3
- uL23
Coloring options: