IL_6HCM_339

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

ACAUUUGGUGUAUG*CGAAGCUACCAU

Length

26 nucleotides

Bulged bases

6HCM|1|52|U|4634, 6HCM|1|52|U|4636, 6HCM|1|52|C|4670, 6HCM|1|52|C|4671

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|52|A|4624
6HCM|1|52|C|4625
6HCM|1|52|A|4626
6HCM|1|52|U|4627
6HCM|1|52|U|4628
6HCM|1|52|U|4629
6HCM|1|52|G|4630
6HCM|1|52|G|4631
6HCM|1|52|U|4632
6HCM|1|52|G|4633
6HCM|1|52|U|4634
6HCM|1|52|A|4635
6HCM|1|52|U|4636
6HCM|1|52|G|4637
*
6HCM|1|52|C|4662
6HCM|1|52|G|4663
6HCM|1|52|A|4664
6HCM|1|52|A|4665
6HCM|1|52|G|4666
6HCM|1|52|C|4667
6HCM|1|52|U|4668
6HCM|1|52|A|4669
6HCM|1|52|C|4670
6HCM|1|52|C|4671
6HCM|1|52|A|4672
6HCM|1|52|U|4673

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain V3

Ribosomal protein L23

Chain W3

eL24

Chain d3

eL31