IL_6HCQ_001

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GAUC*GUC

Length

7 nucleotides

Bulged bases

6HCQ|1|51|U|13

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_001 not in the Motif Atlas

Geometric match to IL_2H1M_003

Geometric discrepancy: 0.2577

The information below is about IL_2H1M_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

6HCQ|1|51|G|11
6HCQ|1|51|A|12
6HCQ|1|51|U|13
6HCQ|1|51|C|14
*
6HCQ|1|81|G|143
6HCQ|1|81|U|144
6HCQ|1|81|C|145

Current chains

Chain 51

28S ribosomal RNA

Chain 81

5.8S ribosomal RNA

Nearby chains

Chain G3

eL8

Chain N3

Ribosomal protein L15

Chain X3

uL23