IL_6HCQ_005

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

AU*AAAUGU

Length

8 nucleotides

Bulged bases

6HCQ|1|51|U|150

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_005 not in the Motif Atlas

Homologous match to IL_8C3A_007

Geometric discrepancy: 0.3681

The information below is about IL_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6HCQ|1|51|A|121
6HCQ|1|51|U|122
*
6HCQ|1|51|A|147
6HCQ|1|51|A|148
6HCQ|1|51|A|149
6HCQ|1|51|U|150
6HCQ|1|51|G|151
6HCQ|1|51|U|152

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 81

5.8S ribosomal RNA; 5.8S rRNA

Chain G3

eL8

Chain N3

Ribosomal protein L15