IL_6HCQ_015

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

6HCQ|1|51|A|349

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_015 not in the Motif Atlas

Homologous match to IL_8C3A_014

Geometric discrepancy: 0.343

The information below is about IL_8C3A_014

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6HCQ|1|51|G|348
6HCQ|1|51|A|349
6HCQ|1|51|C|350
*
6HCQ|1|81|G|25
6HCQ|1|81|C|26

Current chains

Chain 51

28S ribosomal RNA

Chain 81

5.8S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain Y3

Ribosomal protein L26