IL_6HCQ_020

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GCGC*GUC

Length

7 nucleotides

Bulged bases

6HCQ|1|51|C|449

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_020 not in the Motif Atlas

Geometric match to IL_5ED2_004

Geometric discrepancy: 0.194

The information below is about IL_5ED2_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6HCQ|1|51|G|448
6HCQ|1|51|C|449
6HCQ|1|51|G|450
6HCQ|1|51|C|451
*
6HCQ|1|51|G|1296
6HCQ|1|51|U|1297
6HCQ|1|51|C|1298

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain e3

eL32

Chain f3

eL33