IL_6HCQ_054

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CGGUAAAG*CUUUAAAUG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|C|1732
6HCQ|1|51|G|1733
6HCQ|1|51|G|1734
6HCQ|1|51|U|1735
6HCQ|1|51|A|1736
6HCQ|1|51|A|1737
6HCQ|1|51|A|1738
6HCQ|1|51|G|1739
*
6HCQ|1|51|C|1789
6HCQ|1|51|U|1790
6HCQ|1|51|U|1791
6HCQ|1|51|U|1792
6HCQ|1|51|A|1793
6HCQ|1|51|A|1794
6HCQ|1|51|A|1795
6HCQ|1|51|U|1796
6HCQ|1|51|G|1797

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 71

5S ribosomal RNA; 5S rRNA

Chain D3

60S ribosomal protein L5

Chain F3

uL30

Chain I3

60S ribosomal protein L10

Chain T3

eL21