IL_6HCQ_059

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UUU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_059 not in the Motif Atlas

Geometric match to IL_4WF9_034

Geometric discrepancy: 0.2028

The information below is about IL_4WF9_034

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6HCQ|1|51|U|1861
6HCQ|1|51|U|1862
6HCQ|1|51|U|1863
*
6HCQ|1|51|A|1871
6HCQ|1|51|G|1872
6HCQ|1|51|A|1873

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 71

5S ribosomal RNA; 5S rRNA

Chain I3

60S ribosomal protein L10

Chain b3

eL29