IL_6HCQ_067

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

6HCQ|1|51|U|2084

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_067 not in the Motif Atlas

Homologous match to IL_8GLP_083

Geometric discrepancy: 0.5015

The information below is about IL_8GLP_083

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

6HCQ|1|51|C|2083
6HCQ|1|51|U|2084
6HCQ|1|51|G|2085
*
6HCQ|1|51|C|2272
6HCQ|1|51|G|2273

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain F3

uL30

Chain Q3

eL18

Chain e3

eL32