IL_6HCQ_079

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CCUGGAAUG*CGAGAGAGG

Length

18 nucleotides

Bulged bases

6HCQ|1|51|U|2661, 6HCQ|1|51|A|2674

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|C|2654
6HCQ|1|51|C|2655
6HCQ|1|51|U|2656
6HCQ|1|51|G|2657
6HCQ|1|51|G|2658
6HCQ|1|51|A|2659
6HCQ|1|51|A|2660
6HCQ|1|51|U|2661
6HCQ|1|51|G|2662
*
6HCQ|1|51|C|2672
6HCQ|1|51|G|2673
6HCQ|1|51|A|2674
6HCQ|1|51|G|2675
6HCQ|1|51|A|2676
6HCQ|1|51|G|2677
6HCQ|1|51|A|2678
6HCQ|1|51|G|2679
6HCQ|1|51|G|2680

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain O2

uS15

Chain R3

eL19

Chain Z3

60S ribosomal protein L27

Chain c3

eL30

Chain g3

eL34

Chain p3

eL43