IL_6HCQ_086

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CCCAGUGCUC*GGGUAAACGG

Length

20 nucleotides

Bulged bases

6HCQ|1|51|A|3747

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|C|3699
6HCQ|1|51|C|3700
6HCQ|1|51|C|3701
6HCQ|1|51|A|3702
6HCQ|1|51|G|3703
6HCQ|1|51|U|3704
6HCQ|1|51|G|3705
6HCQ|1|51|C|3706
6HCQ|1|51|U|3707
6HCQ|1|51|C|3708
*
6HCQ|1|51|G|3742
6HCQ|1|51|G|3743
6HCQ|1|51|G|3744
6HCQ|1|51|U|3745
6HCQ|1|51|A|3746
6HCQ|1|51|A|3747
6HCQ|1|51|A|3748
6HCQ|1|51|C|3749
6HCQ|1|51|G|3750
6HCQ|1|51|G|3751

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain A3

Ribosomal protein L8