IL_6HCQ_105

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_105 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.2193

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6HCQ|1|51|C|4412
6HCQ|1|51|C|4413
6HCQ|1|51|A|4414
6HCQ|1|51|A|4415
6HCQ|1|51|G|4416
*
6HCQ|1|51|C|4426
6HCQ|1|51|G|4427
6HCQ|1|51|A|4428
6HCQ|1|51|C|4429
6HCQ|1|51|G|4430

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain I3

60S ribosomal protein L10

Chain m3

eL40