IL_6HCQ_108

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

6HCQ|1|51|A|4518, 6HCQ|1|51|C|4519

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_108 not in the Motif Atlas

Geometric match to IL_5TBW_109

Geometric discrepancy: 0.3437

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6HCQ|1|51|C|4458
6HCQ|1|51|U|4459
*
6HCQ|1|51|A|4517
6HCQ|1|51|A|4518
6HCQ|1|51|C|4519
6HCQ|1|51|G|4520

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain V3

Ribosomal protein L23

Chain q3

Transfer RNA; tRNA