IL_6HCQ_119

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UUG*CAAUG

Length

8 nucleotides

Bulged bases

6HCQ|1|51|A|4656, 6HCQ|1|51|U|4657

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_119 not in the Motif Atlas

Geometric match to IL_4M4O_001

Geometric discrepancy: 0.3079

The information below is about IL_4M4O_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6HCQ|1|51|U|4641
6HCQ|1|51|U|4642
6HCQ|1|51|G|4643
*
6HCQ|1|51|C|4654
6HCQ|1|51|A|4655
6HCQ|1|51|A|4656
6HCQ|1|51|U|4657
6HCQ|1|51|G|4658

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain R3

eL19

Chain d3

eL31