IL_6HCQ_130
3D structure
- PDB id
- 6HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (collided monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.5 Å
Loop
- Sequence
- CAC*GUCG
- Length
- 7 nucleotides
- Bulged bases
- 6HCQ|1|71|C|63
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCQ_130 not in the Motif Atlas
- Geometric match to IL_7A0S_026
- Geometric discrepancy: 0.2417
- The information below is about IL_7A0S_026
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 214
Unit IDs
6HCQ|1|71|C|15
6HCQ|1|71|A|16
6HCQ|1|71|C|17
*
6HCQ|1|71|G|61
6HCQ|1|71|U|62
6HCQ|1|71|C|63
6HCQ|1|71|G|64
Current chains
- Chain 71
- 5S ribosomal RNA
Nearby chains
- Chain 51
- Large subunit ribosomal RNA; LSU rRNA
- Chain D3
- 60S ribosomal protein L5
- Chain I3
- 60S ribosomal protein L10
- Chain J3
- Ribosomal protein L11
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