IL_6HCQ_143

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UCCUUU*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_143 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.257

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6HCQ|1|A2|U|116
6HCQ|1|A2|C|117
6HCQ|1|A2|C|118
6HCQ|1|A2|U|119
6HCQ|1|A2|U|120
6HCQ|1|A2|U|121
*
6HCQ|1|A2|A|343
6HCQ|1|A2|U|344
6HCQ|1|A2|U|345
6HCQ|1|A2|C|346
6HCQ|1|A2|G|347

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain F2

eS4

Chain J2

eS8