IL_6HCQ_182
3D structure
- PDB id
- 6HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (collided monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.5 Å
Loop
- Sequence
- CGGACAGGAUUG*CUCGAUUCCG
- Length
- 22 nucleotides
- Bulged bases
- 6HCQ|1|A2|G|1285
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCQ_182 not in the Motif Atlas
- Homologous match to IL_8P9A_435
- Geometric discrepancy: 0.3697
- The information below is about IL_8P9A_435
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCQ|1|A2|C|1279
6HCQ|1|A2|G|1280
6HCQ|1|A2|G|1281
6HCQ|1|A2|A|1282
6HCQ|1|A2|C|1283
6HCQ|1|A2|A|1284
6HCQ|1|A2|G|1285
6HCQ|1|A2|G|1286
6HCQ|1|A2|A|1287
6HCQ|1|A2|U|1288
6HCQ|1|A2|U|1289
6HCQ|1|A2|G|1290
*
6HCQ|1|A2|C|1309
6HCQ|1|A2|U|1310
6HCQ|1|A2|C|1311
6HCQ|1|A2|G|1312
6HCQ|1|A2|A|1313
6HCQ|1|A2|U|1314
6HCQ|1|A2|U|1315
6HCQ|1|A2|C|1316
6HCQ|1|A2|C|1317
6HCQ|1|A2|G|1318
Current chains
- Chain A2
- 18S ribosomal RNA
Nearby chains
- Chain L2
- eS10
- Chain N2
- 40S ribosomal protein S12
- Chain e2
- uS14
- Chain g2
- Ribosomal protein S27a
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