IL_6HCQ_185

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GUGCAUGG*UCUGUGAUGC

Length

18 nucleotides

Bulged bases

6HCQ|1|A2|C|1331, 6HCQ|1|A2|U|1494, 6HCQ|1|A2|G|1497

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|A2|G|1328
6HCQ|1|A2|U|1329
6HCQ|1|A2|G|1330
6HCQ|1|A2|C|1331
6HCQ|1|A2|A|1332
6HCQ|1|A2|U|1333
6HCQ|1|A2|G|1334
6HCQ|1|A2|G|1335
*
6HCQ|1|A2|U|1492
6HCQ|1|A2|C|1493
6HCQ|1|A2|U|1494
6HCQ|1|A2|G|1495
6HCQ|1|A2|U|1496
6HCQ|1|A2|G|1497
6HCQ|1|A2|A|1498
6HCQ|1|A2|U|1499
6HCQ|1|A2|G|1500
6HCQ|1|A2|C|1501

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain E2

uS3

Chain L2

eS10

Chain V2

uS10

Chain e2

uS14

Chain q3

Transfer RNA; tRNA

Chain v3

mRNA