IL_6HCQ_187

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GUUGG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_187 not in the Motif Atlas

Geometric match to IL_9JA9_001

Geometric discrepancy: 0.3855

The information below is about IL_9JA9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.6

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6HCQ|1|A2|G|1345
6HCQ|1|A2|U|1346
6HCQ|1|A2|U|1347
6HCQ|1|A2|G|1348
6HCQ|1|A2|G|1349
*
6HCQ|1|A2|C|1380
6HCQ|1|A2|G|1381
6HCQ|1|A2|A|1382
6HCQ|1|A2|A|1383
6HCQ|1|A2|C|1384

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain B2

uS2

Chain D2

eS1

Chain E2

uS3

Chain S2

eS17