IL_6HCQ_189

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CAUGC*GAGG

Length

9 nucleotides

Bulged bases

6HCQ|1|A2|U|1397

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_189 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.3184

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6HCQ|1|A2|C|1395
6HCQ|1|A2|A|1396
6HCQ|1|A2|U|1397
6HCQ|1|A2|G|1398
6HCQ|1|A2|C|1399
*
6HCQ|1|A2|G|1447
6HCQ|1|A2|A|1448
6HCQ|1|A2|G|1449
6HCQ|1|A2|G|1450

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain R2

Ribosomal protein S16

Chain S2

eS17

Chain V2

uS10

Chain h2

RACK1