IL_6HCQ_212

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GCCC*GCGGC

Length

9 nucleotides

Bulged bases

6HCQ|1|51|C|245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_212 not in the Motif Atlas

Geometric match to IL_7KJT_003

Geometric discrepancy: 0.2442

The information below is about IL_7KJT_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

56

Unit IDs

6HCQ|1|51|G|193
6HCQ|1|51|C|194
6HCQ|1|51|C|195
6HCQ|1|51|C|196
*
6HCQ|1|51|G|244
6HCQ|1|51|C|245
6HCQ|1|51|G|246
6HCQ|1|51|G|247
6HCQ|1|51|C|248

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 81

5.8S ribosomal RNA; 5.8S rRNA

Chain C3

uL4

Chain Y3

Ribosomal protein L26