IL_6HCQ_220

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GCGGUCCGGCCG*CGGCGACCGGCC

Length

24 nucleotides

Bulged bases

6HCQ|1|51|C|481|||A, 6HCQ|1|51|G|666, 6HCQ|1|51|A|667, 6HCQ|1|51|C|668

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|G|481
6HCQ|1|51|C|481|||A
6HCQ|1|51|G|482
6HCQ|1|51|G|483
6HCQ|1|51|U|484
6HCQ|1|51|C|485
6HCQ|1|51|C|486
6HCQ|1|51|G|487
6HCQ|1|51|G|488
6HCQ|1|51|C|489
6HCQ|1|51|C|490
6HCQ|1|51|G|491
*
6HCQ|1|51|C|662
6HCQ|1|51|G|663
6HCQ|1|51|G|664
6HCQ|1|51|C|665
6HCQ|1|51|G|666
6HCQ|1|51|A|667
6HCQ|1|51|C|668
6HCQ|1|51|C|669
6HCQ|1|51|G|670
6HCQ|1|51|G|671
6HCQ|1|51|C|672
6HCQ|1|51|C|673

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain Q3

eL18

Chain r3

eL28