IL_6HCQ_224

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GAAGGCCCCGG*CCCCGGCAGCAGCAGCUC

Length

29 nucleotides

Bulged bases

6HCQ|1|51|A|732, 6HCQ|1|51|C|738, 6HCQ|1|51|C|738|||A, 6HCQ|1|51|C|924, 6HCQ|1|51|C|925, 6HCQ|1|51|G|933, 6HCQ|1|51|A|935, 6HCQ|1|51|C|936

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|G|731
6HCQ|1|51|A|732
6HCQ|1|51|A|733
6HCQ|1|51|G|734
6HCQ|1|51|G|735
6HCQ|1|51|C|736
6HCQ|1|51|C|737
6HCQ|1|51|C|738
6HCQ|1|51|C|738|||A
6HCQ|1|51|G|739
6HCQ|1|51|G|740
*
6HCQ|1|51|C|922|||B
6HCQ|1|51|C|923
6HCQ|1|51|C|924
6HCQ|1|51|C|925
6HCQ|1|51|G|926
6HCQ|1|51|G|927
6HCQ|1|51|C|928
6HCQ|1|51|A|929
6HCQ|1|51|G|930
6HCQ|1|51|C|931
6HCQ|1|51|A|932
6HCQ|1|51|G|933
6HCQ|1|51|C|934
6HCQ|1|51|A|935
6HCQ|1|51|G|935|||A
6HCQ|1|51|C|936
6HCQ|1|51|U|937
6HCQ|1|51|C|938

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain F3

uL30

Chain M3

Ribosomal protein L14

Chain S3

eL20