IL_6HCQ_233
3D structure
- PDB id
- 6HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (collided monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.5 Å
Loop
- Sequence
- CCGAUGCCGACGCUCAUCAGACCCCAGAAAA*UGAAAAUGGAUG
- Length
- 43 nucleotides
- Bulged bases
- 6HCQ|1|51|G|1919, 6HCQ|1|51|C|1921, 6HCQ|1|51|C|1928, 6HCQ|1|51|U|1930, 6HCQ|1|51|C|1931, 6HCQ|1|51|C|1935, 6HCQ|1|51|G|1940, 6HCQ|1|51|A|2041, 6HCQ|1|51|U|2044, 6HCQ|1|51|G|2045
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCQ|1|51|C|1914
6HCQ|1|51|C|1915
6HCQ|1|51|G|1916
6HCQ|1|51|A|1917
6HCQ|1|51|U|1918
6HCQ|1|51|G|1919
6HCQ|1|51|C|1920
6HCQ|1|51|C|1921
6HCQ|1|51|G|1922
6HCQ|1|51|A|1923
6HCQ|1|51|C|1924
6HCQ|1|51|G|1925
6HCQ|1|51|C|1926
6HCQ|1|51|U|1927
6HCQ|1|51|C|1928
6HCQ|1|51|A|1929
6HCQ|1|51|U|1930
6HCQ|1|51|C|1931
6HCQ|1|51|A|1932
6HCQ|1|51|G|1933
6HCQ|1|51|A|1934
6HCQ|1|51|C|1935
6HCQ|1|51|C|1936
6HCQ|1|51|C|1937
6HCQ|1|51|C|1938
6HCQ|1|51|A|1939
6HCQ|1|51|G|1940
6HCQ|1|51|A|1941
6HCQ|1|51|A|1942
6HCQ|1|51|A|1943
6HCQ|1|51|A|1944
*
6HCQ|1|51|U|2038
6HCQ|1|51|G|2039
6HCQ|1|51|A|2040
6HCQ|1|51|A|2041
6HCQ|1|51|A|2042
6HCQ|1|51|A|2043
6HCQ|1|51|U|2044
6HCQ|1|51|G|2045
6HCQ|1|51|G|2046
6HCQ|1|51|A|2047
6HCQ|1|51|U|2048
6HCQ|1|51|G|2049
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain 71
- 5S ribosomal RNA; 5S rRNA
- Chain B3
- uL3
- Chain H3
- uL6
- Chain I3
- 60S ribosomal protein L10
- Chain M3
- Ribosomal protein L14
- Chain O3
- uL13
- Chain S3
- eL20
- Chain f3
- eL33
- Chain m3
- eL40
Coloring options: