IL_6HCQ_234

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GGUGUUGGUU*AACUAGCCC

Length

19 nucleotides

Bulged bases

6HCQ|1|51|U|1947, 6HCQ|1|51|U|2032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|G|1945
6HCQ|1|51|G|1946
6HCQ|1|51|U|1947
6HCQ|1|51|G|1948
6HCQ|1|51|U|1949
6HCQ|1|51|U|1950
6HCQ|1|51|G|1951
6HCQ|1|51|G|1952
6HCQ|1|51|U|1953
6HCQ|1|51|U|1954
*
6HCQ|1|51|A|2029
6HCQ|1|51|A|2030
6HCQ|1|51|C|2031
6HCQ|1|51|U|2032
6HCQ|1|51|A|2033
6HCQ|1|51|G|2034
6HCQ|1|51|C|2035
6HCQ|1|51|C|2036
6HCQ|1|51|C|2037

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 71

5S ribosomal RNA; 5S rRNA

Chain H3

uL6

Chain I3

60S ribosomal protein L10

Chain S3

eL20

Chain m3

eL40