IL_6HCQ_246

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

AUCGCGAAGG*UGUUGACGCGAU

Length

22 nucleotides

Bulged bases

6HCQ|1|51|A|3663, 6HCQ|1|51|U|3679, 6HCQ|1|51|C|3683

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|A|3656
6HCQ|1|51|U|3657
6HCQ|1|51|C|3658
6HCQ|1|51|G|3659
6HCQ|1|51|C|3660
6HCQ|1|51|G|3661
6HCQ|1|51|A|3662
6HCQ|1|51|A|3663
6HCQ|1|51|G|3664
6HCQ|1|51|G|3665
*
6HCQ|1|51|U|3677
6HCQ|1|51|G|3678
6HCQ|1|51|U|3679
6HCQ|1|51|U|3680
6HCQ|1|51|G|3681
6HCQ|1|51|A|3682
6HCQ|1|51|C|3683
6HCQ|1|51|G|3684
6HCQ|1|51|C|3685
6HCQ|1|51|G|3686
6HCQ|1|51|A|3687
6HCQ|1|51|U|3688

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain A3

Ribosomal protein L8

Chain p3

eL43