IL_6HCQ_247

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GAAUGUCAAAGU*AUGAAGCGC

Length

21 nucleotides

Bulged bases

6HCQ|1|51|A|3711

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|G|3710
6HCQ|1|51|A|3711
6HCQ|1|51|A|3712
6HCQ|1|51|U|3713
6HCQ|1|51|G|3714
6HCQ|1|51|U|3715
6HCQ|1|51|C|3716
6HCQ|1|51|A|3717
6HCQ|1|51|A|3718
6HCQ|1|51|A|3719
6HCQ|1|51|G|3720
6HCQ|1|51|U|3721
*
6HCQ|1|51|A|3733
6HCQ|1|51|U|3734
6HCQ|1|51|G|3735
6HCQ|1|51|A|3736
6HCQ|1|51|A|3737
6HCQ|1|51|G|3738
6HCQ|1|51|C|3739
6HCQ|1|51|G|3740
6HCQ|1|51|C|3741

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 33

Transfer RNA; tRNA

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain A3

Ribosomal protein L8

Chain i3

60S ribosomal protein L36