IL_6HCQ_252

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GGUGUAGAAUAAGUGGGAGGCC*GGCCGCCGGUGAAAUACCACUAC

Length

45 nucleotides

Bulged bases

6HCQ|1|51|U|3957, 6HCQ|1|51|G|3958, 6HCQ|1|51|A|3962, 6HCQ|1|51|U|3964

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|G|3955
6HCQ|1|51|G|3956
6HCQ|1|51|U|3957
6HCQ|1|51|G|3958
6HCQ|1|51|U|3959
6HCQ|1|51|A|3960
6HCQ|1|51|G|3961
6HCQ|1|51|A|3962
6HCQ|1|51|A|3963
6HCQ|1|51|U|3964
6HCQ|1|51|A|3965
6HCQ|1|51|A|3966
6HCQ|1|51|G|3967
6HCQ|1|51|U|3968
6HCQ|1|51|G|3969
6HCQ|1|51|G|3970
6HCQ|1|51|G|3971
6HCQ|1|51|A|3972
6HCQ|1|51|G|3973
6HCQ|1|51|G|3974
6HCQ|1|51|C|3975
6HCQ|1|51|C|3976
*
6HCQ|1|51|G|4035
6HCQ|1|51|G|4036
6HCQ|1|51|C|4037
6HCQ|1|51|C|4038
6HCQ|1|51|G|4039
6HCQ|1|51|C|4040
6HCQ|1|51|C|4041
6HCQ|1|51|G|4042
6HCQ|1|51|G|4043
6HCQ|1|51|U|4044
6HCQ|1|51|G|4045
6HCQ|1|51|A|4046
6HCQ|1|51|A|4047
6HCQ|1|51|A|4048
6HCQ|1|51|U|4049
6HCQ|1|51|A|4050
6HCQ|1|51|C|4051
6HCQ|1|51|C|4052
6HCQ|1|51|A|4053
6HCQ|1|51|C|4054
6HCQ|1|51|U|4055
6HCQ|1|51|A|4056
6HCQ|1|51|C|4057

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 33

Transfer RNA; tRNA

Chain a2

eS25

Chain w3

Ribosomal protein