IL_6HCQ_258

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GACCG*CAGGUU

Length

11 nucleotides

Bulged bases

6HCQ|1|51|A|4548

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_258 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3216

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

6HCQ|1|51|G|4534
6HCQ|1|51|A|4535
6HCQ|1|51|C|4536
6HCQ|1|51|C|4537
6HCQ|1|51|G|4538
*
6HCQ|1|51|C|4547
6HCQ|1|51|A|4548
6HCQ|1|51|G|4549
6HCQ|1|51|G|4550
6HCQ|1|51|U|4551
6HCQ|1|51|U|4552

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain A3

Ribosomal protein L8

Chain I3

60S ribosomal protein L10

Chain q3

Transfer RNA; tRNA