IL_6HCQ_263

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CCUCGGAUAGCCG*CGGUGCGGAGAG

Length

25 nucleotides

Bulged bases

6HCQ|1|51|C|4757, 6HCQ|1|51|U|4758, 6HCQ|1|51|A|4764, 6HCQ|1|51|G|4870, 6HCQ|1|51|C|4871, 6HCQ|1|51|G|4873, 6HCQ|1|51|A|4876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|C|4756
6HCQ|1|51|C|4757
6HCQ|1|51|U|4758
6HCQ|1|51|C|4759
6HCQ|1|51|G|4760
6HCQ|1|51|G|4761
6HCQ|1|51|A|4762
6HCQ|1|51|U|4763
6HCQ|1|51|A|4764
6HCQ|1|51|G|4765
6HCQ|1|51|C|4766
6HCQ|1|51|C|4767
6HCQ|1|51|G|4768
*
6HCQ|1|51|C|4866
6HCQ|1|51|G|4867
6HCQ|1|51|G|4868
6HCQ|1|51|U|4869
6HCQ|1|51|G|4870
6HCQ|1|51|C|4871
6HCQ|1|51|G|4872
6HCQ|1|51|G|4873
6HCQ|1|51|A|4874
6HCQ|1|51|G|4875
6HCQ|1|51|A|4876
6HCQ|1|51|G|4877

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain E3

60S ribosomal protein L6

Chain H3

uL6

Chain M3

Ribosomal protein L14

Chain O3

uL13

Chain S3

eL20