IL_6HCQ_267

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CAUUCGUAGACGACCUGCUUCUGGGUC*GACACAAGG

Length

36 nucleotides

Bulged bases

6HCQ|1|51|U|4976, 6HCQ|1|51|U|4989, 6HCQ|1|51|C|4990

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|C|4970
6HCQ|1|51|A|4971
6HCQ|1|51|U|4972
6HCQ|1|51|U|4973
6HCQ|1|51|C|4974
6HCQ|1|51|G|4975
6HCQ|1|51|U|4976
6HCQ|1|51|A|4977
6HCQ|1|51|G|4978
6HCQ|1|51|A|4979
6HCQ|1|51|C|4980
6HCQ|1|51|G|4981
6HCQ|1|51|A|4982
6HCQ|1|51|C|4983
6HCQ|1|51|C|4984
6HCQ|1|51|U|4985
6HCQ|1|51|G|4986
6HCQ|1|51|C|4987
6HCQ|1|51|U|4988
6HCQ|1|51|U|4989
6HCQ|1|51|C|4990
6HCQ|1|51|U|4991
6HCQ|1|51|G|4992
6HCQ|1|51|G|4993
6HCQ|1|51|G|4994
6HCQ|1|51|U|4995
6HCQ|1|51|C|4996
*
6HCQ|1|51|G|5055
6HCQ|1|51|A|5056
6HCQ|1|51|C|5057
6HCQ|1|51|A|5058
6HCQ|1|51|C|5059
6HCQ|1|51|A|5060
6HCQ|1|51|A|5061
6HCQ|1|51|G|5062
6HCQ|1|51|G|5063

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain P3

uL22

Chain d3

eL31