IL_6HCQ_269

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GGUUUCGUACG*UUGAAAGUCAGCC

Length

24 nucleotides

Bulged bases

6HCQ|1|51|U|5006, 6HCQ|1|51|G|5041, 6HCQ|1|51|G|5049

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|G|4999
6HCQ|1|51|G|5000
6HCQ|1|51|U|5001
6HCQ|1|51|U|5002
6HCQ|1|51|U|5003
6HCQ|1|51|C|5004
6HCQ|1|51|G|5005
6HCQ|1|51|U|5006
6HCQ|1|51|A|5007
6HCQ|1|51|C|5008
6HCQ|1|51|G|5009
*
6HCQ|1|51|U|5039
6HCQ|1|51|U|5040
6HCQ|1|51|G|5041
6HCQ|1|51|A|5042
6HCQ|1|51|A|5043
6HCQ|1|51|A|5044
6HCQ|1|51|G|5045
6HCQ|1|51|U|5046
6HCQ|1|51|C|5047
6HCQ|1|51|A|5048
6HCQ|1|51|G|5049
6HCQ|1|51|C|5050
6HCQ|1|51|C|5051

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain d3

eL31