IL_6HCQ_280

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UGGUGCCAG*CGGUAAUUCCA

Length

20 nucleotides

Bulged bases

6HCQ|1|A2|A|628, 6HCQ|1|A2|U|630, 6HCQ|1|A2|U|631

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|A2|U|609
6HCQ|1|A2|G|610
6HCQ|1|A2|G|611
6HCQ|1|A2|U|612
6HCQ|1|A2|G|613
6HCQ|1|A2|C|614
6HCQ|1|A2|C|615
6HCQ|1|A2|A|616
6HCQ|1|A2|G|617
*
6HCQ|1|A2|C|624
6HCQ|1|A2|G|625
6HCQ|1|A2|G|626
6HCQ|1|A2|U|627
6HCQ|1|A2|A|628
6HCQ|1|A2|A|629
6HCQ|1|A2|U|630
6HCQ|1|A2|U|631
6HCQ|1|A2|C|632
6HCQ|1|A2|C|633
6HCQ|1|A2|A|634

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain E2

uS3

Chain Y2

uS12

Chain f2

40S ribosomal protein S30

Chain q3

Transfer RNA; tRNA

Chain v3

mRNA