IL_6HCQ_284

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GCCGCUAG*CUUGGACCGGC

Length

19 nucleotides

Bulged bases

6HCQ|1|A2|G|970

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|A2|G|949
6HCQ|1|A2|C|950
6HCQ|1|A2|C|951
6HCQ|1|A2|G|952
6HCQ|1|A2|C|953
6HCQ|1|A2|U|954
6HCQ|1|A2|A|955
6HCQ|1|A2|G|956
*
6HCQ|1|A2|C|967
6HCQ|1|A2|U|968
6HCQ|1|A2|U|969
6HCQ|1|A2|G|970
6HCQ|1|A2|G|971
6HCQ|1|A2|A|972
6HCQ|1|A2|C|973
6HCQ|1|A2|C|974
6HCQ|1|A2|G|975
6HCQ|1|A2|G|976
6HCQ|1|A2|C|977

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain 51

Large subunit ribosomal RNA; LSU rRNA

Chain A3

Ribosomal protein L8

Chain C2

40S ribosomal protein S3a

Chain P2

uS11