IL_6HCQ_289

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GGCUCAGCGUGUGCCUACC*GUAACCCGUUGAACCCC

Length

36 nucleotides

Bulged bases

6HCQ|1|A2|C|1553, 6HCQ|1|A2|A|1580, 6HCQ|1|A2|C|1581, 6HCQ|1|A2|U|1585, 6HCQ|1|A2|G|1587

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|A2|G|1540
6HCQ|1|A2|G|1541
6HCQ|1|A2|C|1542
6HCQ|1|A2|U|1543
6HCQ|1|A2|C|1544
6HCQ|1|A2|A|1545
6HCQ|1|A2|G|1546
6HCQ|1|A2|C|1547
6HCQ|1|A2|G|1548
6HCQ|1|A2|U|1549
6HCQ|1|A2|G|1550
6HCQ|1|A2|U|1551
6HCQ|1|A2|G|1552
6HCQ|1|A2|C|1553
6HCQ|1|A2|C|1554
6HCQ|1|A2|U|1555
6HCQ|1|A2|A|1556
6HCQ|1|A2|C|1557
6HCQ|1|A2|C|1558
*
6HCQ|1|A2|G|1577
6HCQ|1|A2|U|1578
6HCQ|1|A2|A|1579
6HCQ|1|A2|A|1580
6HCQ|1|A2|C|1581
6HCQ|1|A2|C|1582
6HCQ|1|A2|C|1583
6HCQ|1|A2|G|1584
6HCQ|1|A2|U|1585
6HCQ|1|A2|U|1586
6HCQ|1|A2|G|1587
6HCQ|1|A2|A|1588
6HCQ|1|A2|A|1589
6HCQ|1|A2|C|1590
6HCQ|1|A2|C|1591
6HCQ|1|A2|C|1592
6HCQ|1|A2|C|1593

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain E2

uS3

Chain G2

Ribosomal protein S5

Chain L2

eS10

Chain R2

Ribosomal protein S16

Chain U2

eS19

Chain V2

uS10

Chain a2

eS25

Chain e2

uS14