IL_6HCQ_303

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CCGGCGGGGCGGAUCUC*GGGACCGCCCCCCGG

Length

32 nucleotides

Bulged bases

6HCQ|1|51|C|498, 6HCQ|1|51|A|509

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|C|494
6HCQ|1|51|C|495
6HCQ|1|51|G|496
6HCQ|1|51|G|497
6HCQ|1|51|C|498
6HCQ|1|51|G|499
6HCQ|1|51|G|500
6HCQ|1|51|G|504
6HCQ|1|51|G|505
6HCQ|1|51|C|506
6HCQ|1|51|G|507
6HCQ|1|51|G|508
6HCQ|1|51|A|509
6HCQ|1|51|U|510
6HCQ|1|51|C|511
6HCQ|1|51|U|512
6HCQ|1|51|C|515
*
6HCQ|1|51|G|646
6HCQ|1|51|G|647
6HCQ|1|51|G|648
6HCQ|1|51|A|649
6HCQ|1|51|C|650
6HCQ|1|51|C|651
6HCQ|1|51|G|652
6HCQ|1|51|C|653
6HCQ|1|51|C|654
6HCQ|1|51|C|655
6HCQ|1|51|C|656
6HCQ|1|51|C|657
6HCQ|1|51|C|658
6HCQ|1|51|G|659
6HCQ|1|51|G|660

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain L3

eL13

Chain Q3

eL18

Chain a3

uL15