IL_6HCQ_308

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GGCCACCCCUC*GCCCGGGGGAGGUUCUCUCGGGGC

Length

35 nucleotides

Bulged bases

6HCQ|1|51|C|1214, 6HCQ|1|51|C|1215, 6HCQ|1|51|A|1222, 6HCQ|1|51|G|1223, 6HCQ|1|51|G|1224, 6HCQ|1|51|U|1225, 6HCQ|1|51|U|1226, 6HCQ|1|51|C|1227, 6HCQ|1|51|U|1228, 6HCQ|1|51|C|1229, 6HCQ|1|51|U|1230

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|G|1074
6HCQ|1|51|G|1075
6HCQ|1|51|C|1076
6HCQ|1|51|C|1077
6HCQ|1|51|A|1078
6HCQ|1|51|C|1079
6HCQ|1|51|C|1080
6HCQ|1|51|C|1081
6HCQ|1|51|C|1082
6HCQ|1|51|U|1083
6HCQ|1|51|C|1084
*
6HCQ|1|51|G|1213
6HCQ|1|51|C|1214
6HCQ|1|51|C|1215
6HCQ|1|51|C|1216
6HCQ|1|51|G|1217
6HCQ|1|51|G|1218
6HCQ|1|51|G|1219
6HCQ|1|51|G|1220
6HCQ|1|51|G|1221
6HCQ|1|51|A|1222
6HCQ|1|51|G|1223
6HCQ|1|51|G|1224
6HCQ|1|51|U|1225
6HCQ|1|51|U|1226
6HCQ|1|51|C|1227
6HCQ|1|51|U|1228
6HCQ|1|51|C|1229
6HCQ|1|51|U|1230
6HCQ|1|51|C|1231
6HCQ|1|51|G|1232
6HCQ|1|51|G|1233
6HCQ|1|51|G|1234
6HCQ|1|51|G|1235
6HCQ|1|51|C|1236

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain E3

60S ribosomal protein L6

Chain F3

uL30

Chain b3

eL29