IL_6HCQ_317

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GCCUUGAAGCCUAG*CGGGUGGAGC

Length

24 nucleotides

Bulged bases

6HCQ|1|51|U|2305, 6HCQ|1|51|A|2313

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|G|2301
6HCQ|1|51|C|2302
6HCQ|1|51|C|2303
6HCQ|1|51|U|2304
6HCQ|1|51|U|2305
6HCQ|1|51|G|2306
6HCQ|1|51|A|2307
6HCQ|1|51|A|2308
6HCQ|1|51|G|2309
6HCQ|1|51|C|2310
6HCQ|1|51|C|2311
6HCQ|1|51|U|2312
6HCQ|1|51|A|2313
6HCQ|1|51|G|2314
*
6HCQ|1|51|C|2325
6HCQ|1|51|G|2326
6HCQ|1|51|G|2327
6HCQ|1|51|G|2328
6HCQ|1|51|U|2329
6HCQ|1|51|G|2330
6HCQ|1|51|G|2331
6HCQ|1|51|A|2332
6HCQ|1|51|G|2333
6HCQ|1|51|C|2334

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 81

5.8S ribosomal RNA; 5.8S rRNA

Chain C3

uL4

Chain Y3

Ribosomal protein L26

Chain e3

eL32

Chain r3

eL28