IL_6HCQ_327

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CCG*CAGG

Length

7 nucleotides

Bulged bases

6HCQ|1|51|A|4548

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_327 not in the Motif Atlas

Geometric match to IL_7A0S_014

Geometric discrepancy: 0.2934

The information below is about IL_7A0S_014

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

6HCQ|1|51|C|4536
6HCQ|1|51|C|4537
6HCQ|1|51|G|4538
*
6HCQ|1|51|C|4547
6HCQ|1|51|A|4548
6HCQ|1|51|G|4549
6HCQ|1|51|G|4550

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain A3

Ribosomal protein L8

Chain I3

60S ribosomal protein L10

Chain q3

Transfer RNA; tRNA