IL_6HCQ_338

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CAUUUA*UAACCUCGGG

Length

16 nucleotides

Bulged bases

6HCQ|1|A2|U|305, 6HCQ|1|A2|G|307

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|A2|C|216
6HCQ|1|A2|A|217
6HCQ|1|A2|U|218
6HCQ|1|A2|U|219
6HCQ|1|A2|U|220
6HCQ|1|A2|A|221
*
6HCQ|1|A2|U|300
6HCQ|1|A2|A|301
6HCQ|1|A2|A|302
6HCQ|1|A2|C|303
6HCQ|1|A2|C|304
6HCQ|1|A2|U|305
6HCQ|1|A2|C|306
6HCQ|1|A2|G|307
6HCQ|1|A2|G|308
6HCQ|1|A2|G|309

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain F2

eS4

Chain J2

eS8

Chain M2

Ribosomal protein S11