IL_6HCQ_339

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

6HCQ|1|A2|U|368, 6HCQ|1|A2|C|369, 6HCQ|1|A2|G|370

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_339 not in the Motif Atlas

Homologous match to IL_8P9A_392

Geometric discrepancy: 0.3143

The information below is about IL_8P9A_392

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01372.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6HCQ|1|A2|U|366
6HCQ|1|A2|U|367
6HCQ|1|A2|U|368
6HCQ|1|A2|C|369
6HCQ|1|A2|G|370
6HCQ|1|A2|A|371
*
6HCQ|1|A2|U|393
6HCQ|1|A2|G|394

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain 51

Large subunit ribosomal RNA; LSU rRNA

Chain J2

eS8

Chain M2

Ribosomal protein S11