IL_6HCQ_344

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GGACGGCCGGGG*CAAGAAUGUUUU

Length

24 nucleotides

Bulged bases

6HCQ|1|A2|G|933, 6HCQ|1|A2|U|1016

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|A2|G|924
6HCQ|1|A2|G|925
6HCQ|1|A2|A|926
6HCQ|1|A2|C|927
6HCQ|1|A2|G|928
6HCQ|1|A2|G|929
6HCQ|1|A2|C|930
6HCQ|1|A2|C|931
6HCQ|1|A2|G|932
6HCQ|1|A2|G|933
6HCQ|1|A2|G|934
6HCQ|1|A2|G|935
*
6HCQ|1|A2|C|1007
6HCQ|1|A2|A|1008
6HCQ|1|A2|A|1009
6HCQ|1|A2|G|1010
6HCQ|1|A2|A|1011
6HCQ|1|A2|A|1012
6HCQ|1|A2|U|1013
6HCQ|1|A2|G|1014
6HCQ|1|A2|U|1015
6HCQ|1|A2|U|1016
6HCQ|1|A2|U|1017
6HCQ|1|A2|U|1018

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain C2

40S ribosomal protein S3a

Chain O2

uS15

Chain b2

eS26

Chain c2

40S ribosomal protein S27

Chain c3

eL30