IL_6HD7_013
3D structure
- PDB id
- 6HD7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-NatA complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUGAAAUU*ACGGAUC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HD7_013 not in the Motif Atlas
- Homologous match to IL_8C3A_016
- Geometric discrepancy: 0.559
- The information below is about IL_8C3A_016
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6HD7|1|1|G|404
6HD7|1|1|U|405
6HD7|1|1|G|406
6HD7|1|1|A|407
6HD7|1|1|A|408
6HD7|1|1|A|409
6HD7|1|1|U|410
6HD7|1|1|U|411
*
6HD7|1|4|A|13
6HD7|1|4|C|14
6HD7|1|4|G|15
6HD7|1|4|G|16
6HD7|1|4|A|17
6HD7|1|4|U|18
6HD7|1|4|C|19
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L4-A
- Chain R
- 60S ribosomal protein L17-A
- Chain g
- 60S ribosomal protein L32
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